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SNP Arrays | Laboratories | Breeds | Countries

SNP Arrays

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Name Alias Code Number of SNPs Platform Download
Affymetrix Axiom Bovine Affymetrix Axiom Bovine 648875 648875 648875 Affymetrix N/A
Illumina BovineLD v1.1 BeadChip Illumina BovineLD v1.1 BeadChip 6912 6912 6912 Illumina N/A
Zoetis Low Density Version 4 No duplicates Zoetis Low Density Version 4 No duplicates 18815 18815_a 18815 Illumina N/A
GeneSeek Genomic Profiler Bovine 100K GeneSeek Genomic Profiler Bovine 100K 95256 95256_a 95256 GeneSeek N/A
Zoetis ZBM Medium Density Zoetis ZBM Medium Density 55341 55341_a 55341 Illumina N/A
ICBF International Dairy and Beef v4 ICBF International Dairy and Beef v4 53262 53262 53262 Thermofisher N/A
ICBF International Dairy and Beef ICBF International Dairy and Beef 217807 217807 217807 ICBF custom N/A
GeneSeek Dairy Ultra LD v2 GeneSeek Dairy Ultra LD v2 7049 7049 7049 GeneSeek N/A
EuroG MD v3 EuroG MD v3 59963 59963_a 59963 Illumina N/A
GeneSeek Genomic Profiler LD v1 GeneSeek Genomic Profiler LD v1 8610 8610 8610 GeneSeek N/A
EuroG MD EuroG MD 41913 41913_a 41913 Eurogenomics N/A
EuroG Eurogenomics 51382 EuroG Eurogenomics 51382 51382_a 51382 Eurogenomics N/A
NRFv2 NRFv2 49600 49600_a 49600 Geno custom N/A
Affymetrix SWISScowHD Version 2 Affymetrix SWISScowHD Version 2 95053 95053_a 95053 Affymetrix N/A
Affymetrix Axiom Bovine 15K Affymetrix Axiom Bovine 15K 15036 15036 15036 Affymetrix N/A
ICBFcustom-52580 ICBFcustom-52580 52580 52580 ICBF custom N/A
GeneChip Bovine Genome GeneChip Bovine Genome 24072 24072 24072 Affymetrix N/A
Affymetrix Axiom Bovine 25K Affymetrix Axiom Bovine 25K 25068 25068 25068 Affymetrix N/A
Affymetrix Axiom Bovine 50K Affymetrix Axiom Bovine 50K 51987 51987 51987 Affymetrix N/A
Illumina 800K BovineHD beadChip Illumina 800K BovineHD beadChip 786799 786799 786799 Illumina N/A
GeneSeek Genomic Profiler indicus GeneSeek Genomic Profiler indicus 35090 35090 35090 GeneSeek N/A
GeneSeek Genomic Profiler 80K GeneSeek Genomic Profiler 80K 77376 77376 77376 GeneSeek N/A
Weatherbys Versa 50K Weatherbys Versa 50K 49629 49629 49629 Weatherbys N/A
EuroG 10K v1 EuroG 10K v1 9072 9072 9072 Eurogenomics N/A
EuroG 10K v7 EuroG 10K v7 10706 10706 10706 Eurogenomics N/A
EuroG 10K v8 EuroG 10K v8 10979 10979 10979 Eurogenomics N/A
EuroG MD EuroG MD 44870 44870 44870 Eurogenomics N/A
EuroG 10K v2 EuroG 10K v2 9001 9001 9001 Eurogenomics N/A
EuroG 10K v3 EuroG 10K v3 9983 9983 9983 Eurogenomics N/A
EuroG 10K v4 EuroG 10K v4 9925 9925 9925 Eurogenomics N/A
EuroG 10K v5 EuroG 10K v5 11497 11497 11497 Eurogenomics N/A
EuroG 10K v6 EuroG 10K v6 11009 11009 11009 Eurogenomics N/A
ICBF International Dairy and Beef v5 ICBF International Dairy and Beef v5 51443 51443_a 51443 Thermofisher N/A
EuroG MD v4 EuroG MD v4 60295 60295_a 60295 Labogena N/A
AxiomCustom300K NHSeekV1 dairy AxiomCustom300K NHSeekV1 dairy 192655 192655_a 192655 Thermofisher N/A
AxiomCustom300K NHSeekV1 AxiomCustom300K NHSeekV1 299326 299326_a 299326 Thermofisher N/A
Illumina BovineHD BeadChip Illumina BovineHD BeadChip 777962 777962_a 777962 Illumina N/A
Illumina BovineLD BeadChip Illumina BovineLD BeadChip 6909 6909_a 6909 Illumina N/A
Illumina BovineLD v.2 BeadChip Illumina BovineLD v.2 BeadChip 7931 7931_a 7931 Illumina N/A
ICBF International Dairy and Beef v2 ICBF International Dairy and Beef v2 16327 16327_a 16327 ICBF custom N/A
GeneSeek Genomic Profiler 50K GeneSeek Genomic Profiler 50K 47662 47662_a 47662 GeneSeek N/A
Illumina BovineSNP50v1 BeadChip Illumina BovineSNP50v1 BeadChip 54001 54001_a 54001 Illumina N/A
Illumina Bovine3k BeadChip Illumina Bovine3k BeadChip 2900 2900_a 2900 Illumina N/A
GeneSeek Genomic Profiler 50K GeneSeek Genomic Profiler 50K 47843 47843_a 47843 GeneSeek N/A
Illumina Bovine 9K Illumina Bovine 9K 8762 8762_a 8762 Illumina N/A
Illumina BovineSNP50v3 BeadChip Illumina BovineSNP50v3 BeadChip 53218 53218_a 53218 Illumina N/A
Illumina BovineSNP50v2 BeadChip Illumina BovineSNP50v2 BeadChip 54609 54609_a 54609 Illumina N/A
GeneSeek Genomic Profiler LD v3 GeneSeek Genomic Profiler LD v3 26151B 26151_b 26151 GeneSeek N/A
GGP Bovine 100K GGP Bovine 100K 94121 94121_a 94121 GeneSeek N/A
EuroG MD v2 EuroG MD v2 45250 45250_a 45250 Eurogenomics N/A
EuroG MD v1 EuroG MD v1 41911 41911_a 41911 Eurogenomics N/A
Axiom STGen100 GenVis Medium Density V2 Axiom STGen100 GenVis Medium Density V2 63836 63836_a 63836 Affymetrix N/A
EuroG MD v2 EuroG MD v2 51376 51376_a 51376 Illumina N/A
GeneSeek Genomic Profiler 9K GeneSeek Genomic Profiler 9K 8984 8984_a 8984 GeneSeek N/A
LIAJ custom chip v1 LIAJ custom chip v1 50464 50464_a 50464 Illumina N/A
Zoetis Low Density Version 4 Zoetis Low Density Version 4 18819 18819_a 18819 Illumina N/A
GeneSeek Genomic Profiler HD v2 GeneSeek Genomic Profiler HD v2 139480 139480_a 139480 GeneSeek N/A
GeneSeek Genomic Profiler v4 GeneSeek Genomic Profiler v4 30105 30105_a 30105 GeneSeek N/A
Zoetis ZBT Low Density Zoetis ZBT Low Density 38275 38275_a 38275 Illumina N/A
DAC-BS50 DAC-BS50 43376 43376_a 43376 Illumina N/A
GeneSeek Genomic Profiler LD v3 GeneSeek Genomic Profiler LD v3 26151 26151_a 26151 GeneSeek N/A
Affymetrix SWISScowHD Version 1 Affymetrix SWISScowHD Version 1 111839 111839_a 111839 Affymetrix N/A
Zoetis ZBU Medium Density Zoetis ZBU Medium Density 58315 58315_a 58315 Illumina N/A
Axiom STGen100 GenVis Medium Density Axiom STGen100 GenVis Medium Density 61915 61915_a 61915 Affymetrix N/A
ICBF International Dairy and Beef v3 ICBF International Dairy and Beef v3 52690 52690_a 52690 ICBF custom N/A
Zoetis Medium Density Version 2 Zoetis Medium Density Version 2 60914 60914_a 60914 Illumina N/A
GeneSeek Genomic Profiler GeneSeek Genomic Profiler 19725 19725_a 19725 GeneSeek N/A
Affymetrix Axiom Bovine Swiss custom LD v1 Affymetrix Axiom Bovine Swiss custom LD v1 42612 42612_a 42612 Affymetrix N/A
Zoetis Low Density Version 5 Zoetis Low Density Version 5 27780 27780_a 27780 Illumina N/A
GeneSeek Genomic Profiler SuperLD v4 GeneSeek Genomic Profiler SuperLD v4 30111 30111_a 30111 GeneSeek N/A
GeneSeek Genomic Profiler HD v1 GeneSeek Genomic Profiler HD v1 76999 76999_a 76999 GeneSeek N/A
GeneSeek Genomic Profiler HD v3 GeneSeek Genomic Profiler HD v3 139376 139376_a 139376 GeneSeek N/A
Weatherbys Scientific Bovine VersaSNP 50K Weatherbys Scientific Bovine VersaSNP 50K 49745 49745_a 49745 Weatherbys N/A
GeneSeek Genomic Profiler 65K GeneSeek Genomic Profiler 65K 65317 65317_a 65317 GeneSeek N/A
ICBF International Dairy and Beef v1 ICBF International Dairy and Beef v1 16499 16499_a 16499 ICBF custom N/A
Zoetis Illumina ZOC Zoetis Illumina ZOC 70148 70148_a 70148 Illumina N/A
EuroG MD v5 EuroG MD v5 59714 59714_a 59714 Illumina N/A
Affymetrix SWISScowLD Version 2 Affymetrix SWISScowLD Version 2 48763 48763_a 48763 Axiom N/A
ICBF International Dairy and Beef v6 ICBF International Dairy and Beef v6 52286 52286_a 52286 Thermofisher N/A
Weatherbys Scientific Bovine VersaSNP 85K Weatherbys Scientific Bovine VersaSNP 85K 83280 83280_a 83280 Weatherbys N/A

Laboratories

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Name
IFN Schönow
ZMD Göttingen
Missing
AGROTIS S.R.L.
GeneSeek Scotland
Zoetis
Parco Tecnologico Padano
Weatherbys Ireland
KOS
Qualitas AG
MIAS
PFCBDF
NRIAP
Eurofins Genomics Europe Genotyping
Genoskan A/S
GeneControl GmbH
The Roslin Institute
INRA
CIGENE
DNA Landmark
Genetics & IVF Institute
GeneSeek
Labogena
Bovine Functional Genomics Laboratory
Genetic Visions-ST
Genes Diffusion
Agranis
Frontiers in Genetics
InterGenomics
University of Liege
Van Haeringen Laboratory

Breeds

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Name Code
Angus AAN
Abondance ABO
Aubrac AUB
Blonde d'Aquitaine BAQ
Belgian Blue BBL
Belgium Red & White BER
Braford BFD
Beefmaster BMA
West-Vlaams Rood BRD
British Frisian BRF
Brangus BRG
Brahman BRM
Brand Rood BRR
Western Flanders Meat BRV
Beef Shorthorn BSH
Brown Swiss BSW
East Flandern White-Red BWR
Bazadais BZD
Charolais CHA
Chianina CIA
Lakenvelder DBE
Devon DEV
Dutch Frisian DFR
Dikbil DIK
Dexter DXT
Eringer ERI
Fjäll FJL
Gascon GAS
Glan Donnersberg GDB
Galloway GLW
Groninger GRO
Guernsey GUE
Gelbvieh GVH
Hereford HER
Highland Cattle HLA
Holstein HOL
Hinterwälder HWD
Jersey JER
Kerry KER
Limousin LIM
Lincoln Reds LIN
Longhorn LON
Luing LUI
Maremmana MAE
Marchigiana MAR
Murray-Grey MGR
Montbliard MON
Meuse Rhine Yssel MRY
Dairy Shorthorn MSH
Nellore NEL
Normandy NMD
Parthenaise PAR
Polish White Backed PBG
Piedmont PIE
Pinzgau PIN
Polish Black-and-White PZB
Polish Red-and-White PZR
Red Angus RAN
Red Dairy Cattle RDC
Rouge des Pres RDP
Holstein, Red and White RED
RHO-breed RHO
Romagnola ROM
Sahiwal SAH
Salers SAL
South Devon SDE
Santa Gertrudis SGE
Simmental SIM
Swiss Original Brown SOB
Speckle Park SPK
Stabiliser STA
Sussex SUS
Tarentaise TAR
Tyrol Grey TGR
Tux TUX
Uckermärker UCK
Verbeter Roodbont VRB
Wagyu WAG
Welsh Black WBL
Belgium Blue Mixt WBM
Witrik WRI
Crossbreed XXX

Countries

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Name Code
United States (Numerical) 840
Aruba ABW
Afghanistan AFG
Angola AGO
Anguilla AIA
Aland Islands ALA
Albania ALB
Andorra AND
Netherlands Antilles ANT
United Arab Emirates ARE
Argentina ARG
Armenia ARM
American Samoa ASM
Antarctica ATA
French Southern Territories ATF
Antigua and Barbuda ATG
Australia AUS
Austria AUT
Azerbaijan AZE
Burundi BDI
Belgium BEL
Benin BEN
Burkina Faso BFA
Bangladesh BGD
Bulgaria BGR
Bahrain BHR
Bahamas BHS
Bosnia and Herzegovina BIH
Saint Barthelemy BLM
Belarus BLR
Belize BLZ
Bermuda BMU
Bolivia BOL
Brazil BRA
Barbados BRB
Brunei Darussalam BRN
Bhutan BTN
Bouvet Island BVT
Botswana BWA
Central African Republic CAF
Canada CAN
Cocos (Keeling) Islands CCK
Switzerland CHE
Chile CHL
China CHN
Cote d Ivoire CIV
Cameroon CMR
Congo, the Democratic Republic of the COD
Congo COG
Cook Islands COK
Colombia COL
Comoros COM
Cape Verde CPV
Costa Rica CRI
Cuba CUB
Christmas Island CXR
Cayman Islands CYM
Cyprus CYP
Czech Republic CZE
Germany DEU
Djibouti DJI
Dominica DMA
Denmark DNK
Dominican Republic DOM
Algeria DZA
Ecuador ECU
Egypt EGY
Eritrea ERI
Western Sahara ESH
Spain ESP
Estonia EST
Ethiopia ETH
Finland FIN
Fiji FJI
Falkland Islands (Malvinas) FLK
France FRA
Faroe Islands FRO
Micronesia, Federated States of FSM
Gabon GAB
United Kingdom GBR
Georgia GEO
Guernsey GGY
Ghana GHA
Gibraltar GIB
Guinea GIN
Guadeloupe GLP
Gambia GMB
Guinea-Bissau GNB
Equatorial Guinea GNQ
Greece GRC
Grenada GRD
Greenland GRL
Guatemala GTM
French Guiana GUF
Guam GUM
Guyana GUY
Hong Kong HKG
Heard Island and McDonald Islands HMD
Honduras HND
Croatia HRV
Haiti HTI
Hungary HUN
Indonesia IDN
Isle of Man IMN
India IND
British Indian Ocean Territory IOT
Ireland IRL
Iran, Islamic Republic of IRN
Iraq IRQ
Iceland ISL
Israel ISR
Italy ITA
Jamaica JAM
Jersey JEY
Jordan JOR
Japan JPN
Kazakhstan KAZ
Kenya KEN
Kyrgyzstan KGZ
Cambodia KHM
Kiribati KIR
Saint Kitts and Nevis KNA
Korea, Republic of KOR
Kuwait KWT
Lao People's Democratic Republic LAO
Lebanon LBN
Liberia LBR
Libyan Arab Jamahiriya LBY
Saint Lucia LCA
Liechtenstein LIE
Sri Lanka LKA
Lesotho LSO
Lithuania LTU
Luxembourg LUX
Latvia LVA
Macao MAC
Saint Martin (French part) MAF
Morocco MAR
Monaco MCO
Moldova, Republic of MDA
Madagascar MDG
Maldives MDV
Mexico MEX
Marshall Islands MHL
Macedonia, the former Yugoslav Republic of MKD
Mali MLI
Malta MLT
Myanmar MMR
Montenegro MNE
Mongolia MNG
Northern Mariana Islands MNP
Mozambique MOZ
Mauritania MRT
Montserrat MSR
Martinique MTQ
Mauritius MUS
Malawi MWI
Malaysia MYS
Mayotte MYT
Namibia NAM
New Caledonia NCL
Niger NER
Norfolk Island NFK
Nigeria NGA
Nicaragua NIC
Niue NIU
Netherlands NLD
Norway NOR
Nepal NPL
Nauru NRU
New Zealand NZL
Oman OMN
Pakistan PAK
Panama PAN
Pitcairn PCN
Peru PER
Philippines PHL
Palau PLW
Papua New Guinea PNG
Poland POL
Puerto Rico PRI
Korea, Democratic People's Republic of PRK
Portugal PRT
Paraguay PRY
Palestine, State of PSE
French Polynesia PYF
Qatar QAT
Reunion REU
Romania ROU
Russian Federation RUS
Rwanda RWA
Saudi Arabia SAU
Sudan SDN
Senegal SEN
Singapore SGP
South Georgia and the South Sandwich Islands SGS
Saint Helena SHN
Svalbard and Jan Mayen SJM
Solomon Islands SLB
Sierra Leone SLE
El Salvador SLV
San Marino SMR
Somalia SOM
Saint Pierre and Miquelon SPM
Serbia SRB
Sao Tome and Principe STP
Suriname SUR
Slovakia SVK
Slovenia SVN
Sweden SWE
Swaziland SWZ
Seychelles SYC
Syrian Arab Republic SYR
Turks and Caicos Islands TCA
Chad TCD
Togo TGO
Thailand THA
Tajikistan TJK
Tokelau TKL
Turkmenistan TKM
Timor-Leste TLS
Tonga TON
Trinidad and Tobago TTO
Tunisia TUN
Turkey TUR
Tuvalu TUV
Taiwan, Province of China TWN
Tanzania, United Republic of TZA
Uganda UGA
Ukraine UKR
United States Minor Outlying Islands UMI
Uruguay URY
United States USA
Uzbekistan UZB
Holy See (Vatican City State) VAT
Saint Vincent and the Grenadines VCT
Venezuela, Bolivarian Republic of VEN
Virgin Islands, British VGB
Virgin Islands, U.S. VIR
Viet Nam VNM
Vanuatu VUT
Wallis and Futuna WLF
Samoa WSM
Yemen YEM
South Africa ZAF
Zambia ZMB
Zimbabwe ZWE